1. Lasergene
Lasergene is a comprehensive DNA and protein sequence analysis software suite comprised of seven applications which include functions ranging from sequence assembly and SNP detection, to automated virtual cloning and primer design.
标签:Alignment, De novo sequencing,De-novo assembly, Genomics,InDel discovery, Integrated solution, Mapping,Phylogenetics, Protein structure analysis, Read alignment, SNP discovery,Sequence analysis,Transcription Factor Binding Site identification
2. GPS
GPS is a high spatial resolution peak detection algorithm for ChIP-Seq data.
标签:Genomics, ChIP-Seq,Transcription Factor Binding Site identification,Regulatory genomics epigenomics
3. ChIPmeta
Combining data from ChIP-seq and ChIP-chip.
标签:Transcription Factor Binding Site identification, ChIP-Seq,ChIP-on-chip
4. HINT
HMM-based Identification of TF Footprints
标签:Regulatory genomics,Regulatory genomics epigenomics, Transcription Factor Binding Site identification